Jesse and his friends are forced to retreat to a safer area, dodging the Wither Storm's attacks and building a bridge along the way. At a cavern, the group rest before they head off again. Gabriel's (or Petra's) memory begins to come back, remembering certain events from earlier episodes. Outside, Soren and Ivor are in an argument about the Wither Storm, but it is revealed that the Wither Storm was intentionally following the amulet as Ivor had programmed. Ivor apologizes for the trouble he caused, and says he has a solution to destroying the command block inside the Wither Storm. Accepting the idea, the group head off to Ivor's lab, located in the Far Lands.
The group decide to take a rest in a swamp and find some food before heading off again. Jesse and Ivor find a nearby witch hut with a cake adoring the window, but Ivor warns him that witches hate trespassers. Fending the cake, the witch arrives back at the hut, attacking Jesse with potions. Jesse and the group barely escape the onslaught and arrive at the Far Lands. They find an entrance that leads them to Ivor's lab, completing a maze and building a redstone contraption in the process.
Inside the lab, Jesse and Soren find the five treasures of the Order (prismarine shards, prismarine, ghast tear, packed ice, and a dragon egg), and use them to open up yet another door, leading them to a room with end crystals. Jesse realizes that the crystals should've exploded when the dragon was defeated, and forces Soren to speak the truth. Soren says that the dragon was actually killed with a command block made by Soren, which ultimately caused Ivor to leave the group in the first place. Jesse and his group of friends are in total shock about this ordeal, but quickly forget it as they have to defeat the wither storm. Ivor hands Jesse the enchantment needed in order to break the command block, and uses it on a diamond tool. He also uses a set of armor that is able to withstand TNT blasts. With everyone ready to go, they head back to the main land to fight the Wither Storm.
Back at Soren's temple, the group attempt to destroy the Wither Storm by provoking Endermen to be attracted to it. The Enderman are then able to remove blocks from the Wither Storm, creating a hole that allows Jesse to go inside the Storm. The group use all of the items that they have to create an invention that will allow Jesse to go inside the Storm. The invention works, launching Jesse and Reuben into the Wither Storm. Inside the Storm, Jesse and Reuben find the command block surrounded by four tentacles. With Jesse using the enchanted weapon, the command block begins to crack, provoking the Wither Storm. Jesse fends off numerous tentacles, and is able to crack the command block a second time. He then decides to use one of its tentacles to destroy the command block, in which he successfully does so, causing the Storm to explode.
Back on the ground, Jesse finds Reuben, who unfortunately dies due to the explosion. Back at Endercon, a memorial for Reuben is made, and everyone congratulates Jesse and his group of friends (now known as the Order) for stopping the Wither Storm. The group then head off on their next adventure.